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useR!2017

Laurent Gatto

University of Cambridge
Senior Research Associate
Cambridge, UK

lgatto.github.io/

I am a Senior Research Associate in the Department of Biochemistry at the University of Cambridge, UK, and a PI in the Cambridge Systems Biology Centre, where I lead the Computational Proteomics Unit. I am an avid open research advocate and make every possible effort to make my research reproducible and openly accessible. I am a Software Sustainability Institute fellow and a Data and Software Carpentry instructor and a founding member of OpenConCam, our local OpenCon group. Since July 2017, I am also part of the eLife Early-career advisory group.

8:00am CEST

REGISTRATION Wild Gallery

9:30am CEST

Rcpp: From Simple Examples to Machine Learning PLENARY

11:00am CEST

COFFEE BREAK CATERING POINTS

11:30am CEST

Introduction to Bayesian inference with JAGS 2.01 Solving iteration problems with purrr 3.02

1:00pm CEST

LUNCH CATERING POINTS

2:00pm CEST

Introduction to Natural Language Processing with R 3.02 OpenML: Connecting R to the Machine Learning Platform OpenML 4.02

3:30pm CEST

COFFEE BREAK CATERING POINTS

4:00pm CEST

R package development with R-hub 2.02

9:00am CEST

WELCOME PLENARY

9:30am CEST

KEYNOTE: Structural Equation Modeling: models, software and stories PLENARY

10:30am CEST

COFFEE BREAK CATERING POINTS

11:00am CEST

Updates to the Documentation System for R 3.02

11:18am CEST

Ensemble packages with user friendly interface: an added value for the R community 3.02

11:36am CEST

Collaborative Development in R: A Case Study with the sparsebn package 3.02 Interacting with databases from Shiny 4.02

11:54am CEST

RL10N: Translating Error Messages & Warnings 3.02 ShinyProxy 4.02

12:12pm CEST

The R6 Class System 3.02

12:30pm CEST

LUNCH CATERING POINTS

1:30pm CEST

Stream processing with R in AWS 3.02 Text mining, the tidy way 4.02

1:48pm CEST

Architectural Elements Enabling R for Big Data 3.02

2:06pm CEST

A Tidy Data Model for Natural Language Processing 4.02 How the R Consortium is Supporting the R Community PLENARY Rc$^2$: an Environment for Running R and Spark in Docker Containers 3.02

2:24pm CEST

Diversity of the R Community PLENARY R goes Mobile: Efficient Scheduling for Parallel R Programs on Heterogeneous Embedded Systems 3.02 Text Analysis and Text Mining Using R 4.02

2:42pm CEST

Scalable, Spatiotemporal Tidy Arrays for R (stars) 3.01 We R What We Ask: The Landscape of R Users on Stack Overflow PLENARY

3:00pm CEST

COFFEE BREAK CATERING POINTS

3:45pm CEST

KEYNOTE: Teaching data science to new useRs PLENARY

4:45pm CEST

COFFEE BREAK CATERING POINTS

5:00pm CEST

Navigating the R package universe PLENARY

6:30pm CEST

Poster Reception CATERING POINTS

9:30am CEST

KEYNOTE: Dose-response analysis: considering dose both as qualitative factor and quantitative covariate- using R* PLENARY

10:30am CEST

COFFEE BREAK CATERING POINTS

11:00am CEST

Hosting Data Packages via `drat`: A Case Study with Hurricane Exposure Data 2.02 moodler: A new R package to easily fetch data from Moodle 4.02

11:18am CEST

Can you keep a secret? 4.02 Clouds, Containers and R, towards a global hub for reproducible and collaborative data science 2.02

11:36am CEST

codebookr: Codebooks in *R* 2.02 Scraping data with rvest and purrr 4.02

11:54am CEST

Show me the errors you didn't look for 2.02

12:12pm CEST

Automatically archiving reproducible studies with Docker 2.02

12:30pm CEST

LUNCH CATERING POINTS

1:30pm CEST

Community-based learning and knowledge sharing PLENARY R-based computing with big data on disk 2.01 ReinforcementLearning: A package for replicating human behavior in R 3.02

1:48pm CEST

An LLVM-based Compiler Toolkit for R 2.02 Daff: diff, patch and merge for data.frames 2.01 Data Carpentry: Teaching Reproducible Data Driven Discovery PLENARY Deep Learning for Natural Language Processing in R 3.02 Package ggiraph: a ggplot2 Extension for Interactive Graphics 4.02

2:06pm CEST

odbc - A modern database interface 2.01 R4ML: A Scalable R for Machine Learning 3.02

2:24pm CEST

How to Use (R)Stan to Estimate Models in External R Packages 3.01 Improving DBI 2.01

3:00pm CEST

COFFEE BREAK CATERING POINTS

3:45pm CEST

KEYNOTE: Parallel Computation in R: What We Want, and How We (Might) Get It PLENARY

5:15pm CEST

COFFEE BREAK CATERING POINTS

5:30pm CEST

R Blogging with blogdown and GitHub 3.02

5:35pm CEST

**redmineR** and the story of automating *useR!2017* abstract review process 3.02

5:40pm CEST

Automatic Machine Learning in R 4.02 R in Minecraft 3.01

5:50pm CEST

**heatmaply**: an *R* package for creating interactive cluster heatmaps 2.02 rOpenGov: community project for open government data 3.02

5:55pm CEST

Plot Colour Helper – Finally an easy way to pick colours for your R plots! 2.02

6:00pm CEST

bsplus: Using Twitter Bootstrap to extend your Shiny app 2.02

6:10pm CEST

Object-oriented markdown in R to facilitate collaboration 2.02

6:15pm CEST

Gamifyr: Transforming Machine Learning Tasks into Games with Shiny 4.02 Strategies for Reproducible Research with Packrat 2.02 Working with R when internet is not reliable 3.02

9:30am CEST

KEYNOTE: R tools for the analysis of complex heterogeneous data PLENARY

10:30am CEST

COFFEE BREAK CATERING POINTS

11:00am CEST

naniar: Data structures and functions for consistent exploration of missing data 2.01 Programming with tidyverse grammars 4.02

11:18am CEST

Easy imputation with the simputation package 2.01 Modules in R 4.02

11:36am CEST

papr: Tinder for pre-prints, a Shiny Application for collecting gut-reactions to pre-prints from the scientific community PLENARY Taking Advantage of the Byte Code Compiler 4.02

11:54am CEST

R and Haskell: Combining the best of two worlds 2.02

12:12pm CEST

LUNCH CATERING POINTS

1:15pm CEST

KEYNOTE: 20 years of CRAN PLENARY